HL_9R3A_046

3D structure

PDB id

9R3A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of Stalled Beta-Galactosidase 70S Ribosome Nascent Chain

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9R3A|1|a|G|329, 9R3A|1|a|A|330, 9R3A|1|a|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R3A_046 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.3822

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.4

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

16

Unit IDs

9R3A|1|a|G|327
9R3A|1|a|U|328
9R3A|1|a|G|329
9R3A|1|a|A|330
9R3A|1|a|C|331
9R3A|1|a|A|332
9R3A|1|a|G|333
9R3A|1|a|C|334
9R3A|1|a|C|335

Current chains

Chain a

23S rRNA

Nearby chains

Chain e

Large ribosomal subunit protein uL4

Chain t

Large ribosomal subunit protein uL24