HL_9R9O_002
3D structure
- PDB id
- 9R9O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUCUCAUAAUC
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9R9O_002 not in the Motif Atlas
- Homologous match to HL_5IB8_208
- Geometric discrepancy: 0.3373
- The information below is about HL_5IB8_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_14063.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
9R9O|1|6|G|30
9R9O|1|6|U|31
9R9O|1|6|C|32
9R9O|1|6|U|33
9R9O|1|6|C|34
9R9O|1|6|A|35
9R9O|1|6|U|36
9R9O|1|6|A|37
9R9O|1|6|A|38
9R9O|1|6|U|39
9R9O|1|6|C|40
Current chains
- Chain 6
- tRNA Methionin elongator
Nearby chains
- Chain 5
- mRNA_Flag-Pgk-1-70
- Chain C2
- Small subunit ribosomal RNA; SSU rRNA
- Chain SQ
- 40S ribosomal protein S16-A
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