HL_9R9O_025

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

9R9O|1|C1|C|959, 9R9O|1|C1|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_025 not in the Motif Atlas

Homologous match to HL_9H3G_028

Geometric discrepancy: 0.0967

The information below is about HL_9H3G_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.4

Basepair signature

cWW-F-F

Number of instances in this motif group

12

Unit IDs

9R9O|1|C1|C|958
9R9O|1|C1|C|959
9R9O|1|C1|U|960
9R9O|1|C1|C|961
9R9O|1|C1|A|962
9R9O|1|C1|G|963

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain La

60S ribosomal protein L28

Chain Lb

60S ribosomal protein L29

Chain Lo

60S ribosomal protein L42-A