HL_9R9O_051

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUAAACGAUAACG

Length

13 nucleotides

Bulged bases

9R9O|1|C1|A|2637, 9R9O|1|C1|C|2644

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C1|U|2633
9R9O|1|C1|U|2634
9R9O|1|C1|A|2635
9R9O|1|C1|A|2636
9R9O|1|C1|A|2637
9R9O|1|C1|C|2638
9R9O|1|C1|G|2639
9R9O|1|C1|A|2640
9R9O|1|C1|U|2641
9R9O|1|C1|A|2642
9R9O|1|C1|A|2643
9R9O|1|C1|C|2644
9R9O|1|C1|G|2645

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain LT

60S ribosomal protein L21-A

Chain Lb

60S ribosomal protein L29