HL_9R9O_062

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9R9O|1|C1|G|3116, 9R9O|1|C1|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9R9O|1|C1|C|3110
9R9O|1|C1|U|3111
9R9O|1|C1|G|3112
9R9O|1|C1|A|3113
9R9O|1|C1|A|3114
9R9O|1|C1|C|3115
9R9O|1|C1|G|3116
9R9O|1|C1|C|3117
9R9O|1|C1|C|3118
9R9O|1|C1|U|3119
9R9O|1|C1|C|3120
9R9O|1|C1|U|3121
9R9O|1|C1|A|3122
9R9O|1|C1|A|3123
9R9O|1|C1|G|3124

Current chains

Chain C1

25S ribosomal RNA

Nearby chains

Chain LH

60S ribosomal protein L9-A

Chain LO

60S ribosomal protein L16-A