HL_9R9O_100

3D structure

PDB id

9R9O (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 80S with nascent chain in complex with Ssb1-ADP in the S1 state

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UUCCCGUCCGAUCA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9R9O_100 not in the Motif Atlas

Geometric match to HL_8OI5_068

Geometric discrepancy: 0.0864

The information below is about HL_8OI5_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01182.1

Basepair signature

cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F

Number of instances in this motif group

4

Unit IDs

9R9O|1|C4|U|32
9R9O|1|C4|U|33
9R9O|1|C4|C|34
9R9O|1|C4|C|35
9R9O|1|C4|C|36
9R9O|1|C4|G|37
9R9O|1|C4|U|38
9R9O|1|C4|C|39
9R9O|1|C4|C|40
9R9O|1|C4|G|41
9R9O|1|C4|A|42
9R9O|1|C4|U|43
9R9O|1|C4|C|44
9R9O|1|C4|A|45

Current chains

Chain C4

5S ribosomal RNA

Nearby chains

Chain C1

Large subunit ribosomal RNA; LSU rRNA

Chain LD

60S ribosomal protein L5

Chain LJ

60S ribosomal protein L11-A