HL_9RBF_011

3D structure

PDB id

9RBF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a stalled E. coli 70S RNC-NuoK-86 in complex with the membrane protein insertase SecYEG-YidC

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

9RBF|1|A|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RBF_011 not in the Motif Atlas

Geometric match to HL_4V9F_032

Geometric discrepancy: 0.2147

The information below is about HL_4V9F_032

Detailed Annotation

Anticodon loop related

Broad Annotation

Anticodon loop related

Motif group

HL_87306.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9RBF|1|A|G|462
9RBF|1|A|U|463
9RBF|1|A|U|464
9RBF|1|A|A|465
9RBF|1|A|A|466
9RBF|1|A|U|467
9RBF|1|A|A|468
9RBF|1|A|C|469
9RBF|1|A|C|470

Current chains

Chain A

16S rRNA

Nearby chains