HL_9RHU_005

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

GGUGACUC

Length

8 nucleotides

Bulged bases

9RHU|1|A1|C|294, 9RHU|1|A1|U|295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_005 not in the Motif Atlas

Homologous match to HL_9PN5_082

Geometric discrepancy: 0.2477

The information below is about HL_9PN5_082

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_67772.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

9RHU|1|A1|G|289
9RHU|1|A1|G|290
9RHU|1|A1|U|291
9RHU|1|A1|G|292
9RHU|1|A1|A|293
9RHU|1|A1|C|294
9RHU|1|A1|U|295
9RHU|1|A1|C|296

Current chains

Chain A1

18S rRNA

Nearby chains

Chain P1

40S ribosomal protein S4

Chain R1

40S ribosomal protein S6

Chain W1

Small ribosomal subunit protein uS17