HL_9RHU_085

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

G(PSU)A(A2M)C(PSU)A(PSU)GAC

Length

11 nucleotides

Bulged bases

9RHU|1|A3|A2M|3492

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RHU|1|A3|G|3489
9RHU|1|A3|PSU|3490
9RHU|1|A3|A|3491
9RHU|1|A3|A2M|3492
9RHU|1|A3|C|3493
9RHU|1|A3|PSU|3494
9RHU|1|A3|A|3495
9RHU|1|A3|PSU|3496
9RHU|1|A3|G|3497
9RHU|1|A3|A|3498
9RHU|1|A3|C|3499

Current chains

Chain A3

28S rRNA

Nearby chains

Chain A1

Small subunit ribosomal RNA; SSU rRNA

Chain I1

mRNA containing F2A sequence

Chain K1

Transfer RNA; tRNA

Chain p2

Eukaryotic peptide chain release factor subunit 1