HL_9RHU_093

3D structure

PDB id

9RHU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence

Experimental method

ELECTRON MICROSCOPY

Resolution

2.65 Å

Loop

Sequence

UUCAG(OMU)ACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RHU_093 not in the Motif Atlas

Homologous match to HL_8GLP_063

Geometric discrepancy: 0.041

The information below is about HL_8GLP_063

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_15296.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9RHU|1|A3|U|4047
9RHU|1|A3|U|4048
9RHU|1|A3|C|4049
9RHU|1|A3|A|4050
9RHU|1|A3|G|4051
9RHU|1|A3|OMU|4052
9RHU|1|A3|A|4053
9RHU|1|A3|C|4054
9RHU|1|A3|G|4055

Current chains

Chain A3

28S rRNA

Nearby chains

Chain M2

eL18

Chain P2

60S ribosomal protein L21

Chain W2

60S ribosomal protein L27a

Chain j2

Ribosomal protein L36a