HL_9RHU_114
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- ACUUUUAAU
- Length
- 9 nucleotides
- Bulged bases
- 9RHU|1|J1|U|34
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RHU_114 not in the Motif Atlas
- Homologous match to HL_6CFJ_107
- Geometric discrepancy: 0.3339
- The information below is about HL_6CFJ_107
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_81376.3
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 43
Unit IDs
9RHU|1|J1|A|31
9RHU|1|J1|C|32
9RHU|1|J1|U|33
9RHU|1|J1|U|34
9RHU|1|J1|U|35
9RHU|1|J1|U|36
9RHU|1|J1|A|37
9RHU|1|J1|A|38
9RHU|1|J1|U|39
Current chains
- Chain J1
- E-site tRNA-Pro
Nearby chains
- Chain A1
- Small subunit ribosomal RNA; SSU rRNA
- Chain C1
- Small ribosomal subunit protein eS28
- Chain I1
- mRNA containing F2A sequence
- Chain K1
- Transfer RNA; tRNA
- Chain Q1
- Small ribosomal subunit protein uS7
- Chain Z1
- Small ribosomal subunit protein uS11
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