HL_9RHU_116
3D structure
- PDB id
- 9RHU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Rabbit 80S ribosome in complex with eRF1-AAQ, stalled at the Stop codon in mutated F2A sequence
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.65 Å
Loop
- Sequence
- G(PSU)(1MA)G(H2U)GGUAUC
- Length
- 11 nucleotides
- Bulged bases
- 9RHU|1|K1|G|18, 9RHU|1|K1|G|19, 9RHU|1|K1|U|20, 9RHU|1|K1|A|21
- QA status
- Modified nucleotides: PSU, 1MA, H2U
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RHU_116 not in the Motif Atlas
- Homologous match to HL_4QEI_001
- Geometric discrepancy: 0.1644
- The information below is about HL_4QEI_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_76195.1
- Basepair signature
- cWW-cWW-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
9RHU|1|K1|G|12
9RHU|1|K1|PSU|13
9RHU|1|K1|1MA|14
9RHU|1|K1|G|15
9RHU|1|K1|H2U|16
9RHU|1|K1|G|18
9RHU|1|K1|G|19
9RHU|1|K1|U|20
9RHU|1|K1|A|21
9RHU|1|K1|U|22
9RHU|1|K1|C|23
Current chains
- Chain K1
- P-site tRNA-Gly
Nearby chains
- Chain A3
- Large subunit ribosomal RNA; LSU rRNA
- Chain F2
- 60S ribosomal protein L11
- Chain j2
- Ribosomal protein L36a
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