HL_9RPV_150

3D structure

PDB id

9RPV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ZAK-bound human disome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.35 Å

Loop

Sequence

GGAGAGGC

Length

8 nucleotides

Bulged bases

9RPV|1|M5|G|4910, 9RPV|1|M5|A|4911, 9RPV|1|M5|G|4913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RPV_150 not in the Motif Atlas

Homologous match to HL_8GLP_074

Geometric discrepancy: 0.1079

The information below is about HL_8GLP_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31089.4

Basepair signature

cWW-F-F-F

Number of instances in this motif group

10

Unit IDs

9RPV|1|M5|G|4907
9RPV|1|M5|G|4908
9RPV|1|M5|A|4909
9RPV|1|M5|G|4910
9RPV|1|M5|A|4911
9RPV|1|M5|G|4912
9RPV|1|M5|G|4913
9RPV|1|M5|C|4914

Current chains

Chain M5

28S rRNA of the stalled 80S

Nearby chains

Chain MB

Large ribosomal subunit protein uL3

Chain MO

60S ribosomal protein L13a