HL_9RU7_049

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CGU(PSU)CA(PSU)AG

Length

9 nucleotides

Bulged bases

9RU7|1|L5|U|4419

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RU7_049 not in the Motif Atlas

Homologous match to HL_9PN5_059

Geometric discrepancy: 0.1579

The information below is about HL_9PN5_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52011.4

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

9RU7|1|L5|C|4417
9RU7|1|L5|G|4418
9RU7|1|L5|U|4419
9RU7|1|L5|PSU|4420
9RU7|1|L5|C|4421
9RU7|1|L5|A|4422
9RU7|1|L5|PSU|4423
9RU7|1|L5|A|4424
9RU7|1|L5|G|4425

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LI

60S ribosomal protein L10

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein