HL_9RU7_050

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

9RU7|1|L5|G|4475

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RU7_050 not in the Motif Atlas

Homologous match to HL_9PN5_060

Geometric discrepancy: 0.0998

The information below is about HL_9PN5_060

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

38

Unit IDs

9RU7|1|L5|A|4474
9RU7|1|L5|G|4475
9RU7|1|L5|C|4476
9RU7|1|L5|A|4477
9RU7|1|L5|G|4478
9RU7|1|L5|A|4479
9RU7|1|L5|A|4480
9RU7|1|L5|U|4481

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein