HL_9RU7_055

3D structure

PDB id

9RU7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

WT-HEK 80S ribosome bound to Kozak mRNA (WT-Kozak)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

C(PSU)GAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

9RU7|1|L5|G|4694, 9RU7|1|L5|C|4698

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9RU7|1|L5|C|4688
9RU7|1|L5|PSU|4689
9RU7|1|L5|G|4690
9RU7|1|L5|A|4691
9RU7|1|L5|A|4692
9RU7|1|L5|C|4693
9RU7|1|L5|G|4694
9RU7|1|L5|C|4695
9RU7|1|L5|C|4696
9RU7|1|L5|U|4697
9RU7|1|L5|C|4698
9RU7|1|L5|U|4699
9RU7|1|L5|A|4700
9RU7|1|L5|A|4701
9RU7|1|L5|G|4702

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LH

60S ribosomal protein L9

Chain LO

60S ribosomal protein L13a

Chain Lm

Ubiquitin-ribosomal protein eL40 fusion protein