HL_9RVC_015
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGGUGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RVC_015 not in the Motif Atlas
- Homologous match to HL_6CZR_086
- Geometric discrepancy: 0.125
- The information below is about HL_6CZR_086
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.4
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9RVC|1|A|C|697
9RVC|1|A|G|698
9RVC|1|A|G|699
9RVC|1|A|U|700
9RVC|1|A|G|701
9RVC|1|A|A|702
9RVC|1|A|A|703
9RVC|1|A|A|704
9RVC|1|A|U|705
9RVC|1|A|G|706
Current chains
- Chain A
- 16S rRNA
Nearby chains
- Chain G
- Small ribosomal subunit protein uS7
- Chain K
- Small ribosomal subunit protein uS11
- Chain X
- spa mRNA
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: