HL_9RVC_036
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CAGCCUGGUAG
- Length
- 11 nucleotides
- Bulged bases
- 9RVC|1|Z|G|18, 9RVC|1|Z|G|19, 9RVC|1|Z|U|20
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RVC_036 not in the Motif Atlas
- Homologous match to HL_6PMO_003
- Geometric discrepancy: 0.1091
- The information below is about HL_6PMO_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9RVC|1|Z|C|13
9RVC|1|Z|A|14
9RVC|1|Z|G|15
9RVC|1|Z|C|16
9RVC|1|Z|C|17
9RVC|1|Z|U|17|||A
9RVC|1|Z|G|18
9RVC|1|Z|G|19
9RVC|1|Z|U|20
9RVC|1|Z|A|21
9RVC|1|Z|G|22
Current chains
- Chain Z
- P-site tRNA-Met
Nearby chains
- Chain a
- Large subunit ribosomal RNA; LSU rRNA
- Chain f
- Large ribosomal subunit protein uL5
Coloring options: