HL_9RVC_044

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

9RVC|1|a|A|199, 9RVC|1|a|A|202

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_044 not in the Motif Atlas

Homologous match to HL_7A0S_006

Geometric discrepancy: 0.1099

The information below is about HL_7A0S_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02262.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

36

Unit IDs

9RVC|1|a|G|197
9RVC|1|a|A|198
9RVC|1|a|A|199
9RVC|1|a|A|200
9RVC|1|a|C|201
9RVC|1|a|A|202
9RVC|1|a|U|203
9RVC|1|a|C|204

Current chains

Chain a

23S rRNA

Nearby chains

Chain k

Large ribosomal subunit protein uL15

Chain w

Large ribosomal subunit protein bL28