HL_9RVC_087

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9RVC|1|a|U|1982

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_087 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.1012

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9RVC|1|a|G|1976
9RVC|1|a|G|1977
9RVC|1|a|U|1978
9RVC|1|a|A|1979
9RVC|1|a|A|1980
9RVC|1|a|G|1981
9RVC|1|a|U|1982
9RVC|1|a|U|1983
9RVC|1|a|C|1984

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain U

Large ribosomal subunit protein uL14

Chain Y

Transfer RNA; tRNA