HL_9RVC_088

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

9RVC|1|a|A|2057, 9RVC|1|a|A|2058, 9RVC|1|a|G|2059

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_088 not in the Motif Atlas

Homologous match to HL_7A0S_049

Geometric discrepancy: 0.3618

The information below is about HL_7A0S_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

9RVC|1|a|G|2054
9RVC|1|a|U|2055
9RVC|1|a|G|2056
9RVC|1|a|A|2057
9RVC|1|a|A|2058
9RVC|1|a|G|2059
9RVC|1|a|A|2060
9RVC|1|a|U|2061
9RVC|1|a|G|2062
9RVC|1|a|C|2063

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

Large ribosomal subunit protein uL3

Chain z

Large ribosomal subunit protein bL32