HL_9RVC_098
3D structure
- PDB id
- 9RVC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- staphylococcus aureus 70S initiation complex with natural mRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- AGUUCACAU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9RVC_098 not in the Motif Atlas
- Homologous match to HL_7A0S_059
- Geometric discrepancy: 0.2269
- The information below is about HL_7A0S_059
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_52011.3
- Basepair signature
- cWW-tSH-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
9RVC|1|a|A|2498
9RVC|1|a|G|2499
9RVC|1|a|U|2500
9RVC|1|a|U|2501
9RVC|1|a|C|2502
9RVC|1|a|A|2503
9RVC|1|a|C|2504
9RVC|1|a|A|2505
9RVC|1|a|U|2506
Current chains
- Chain a
- 23S rRNA
Nearby chains
- Chain 3
- Large ribosomal subunit protein bL36
- Chain Y
- Transfer RNA; tRNA
- Chain l
- Large ribosomal subunit protein uL16
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