HL_9RVC_104

3D structure

PDB id

9RVC (explore in PDB, NAKB, or RNA 3D Hub)

Description

staphylococcus aureus 70S initiation complex with natural mRNA

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

9RVC|1|a|G|2778, 9RVC|1|a|C|2782

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9RVC_104 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.2616

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.4

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

12

Unit IDs

9RVC|1|a|C|2772
9RVC|1|a|U|2773
9RVC|1|a|G|2774
9RVC|1|a|A|2775
9RVC|1|a|A|2776
9RVC|1|a|A|2777
9RVC|1|a|G|2778
9RVC|1|a|C|2779
9RVC|1|a|A|2780
9RVC|1|a|U|2781
9RVC|1|a|C|2782
9RVC|1|a|U|2783
9RVC|1|a|A|2784
9RVC|1|a|A|2785
9RVC|1|a|G|2786

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36

Chain J

Large ribosomal subunit protein uL13

Chain g

Large ribosomal subunit protein uL6