HL_9SRA_036
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_036 not in the Motif Atlas
- Homologous match to HL_4V9F_034
- Geometric discrepancy: 0.1872
- The information below is about HL_4V9F_034
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9SRA|1|1|G|1540
9SRA|1|1|U|1541
9SRA|1|1|G|1542
9SRA|1|1|A|1543
9SRA|1|1|G|1544
9SRA|1|1|A|1545
9SRA|1|1|A|1546
9SRA|1|1|U|1547
9SRA|1|1|C|1548
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BQ
- Large ribosomal subunit protein eL19
- Chain BS
- Large ribosomal subunit protein uL22
- Chain Ba
- Large ribosomal subunit protein eL31
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