HL_9SRA_103
3D structure
- PDB id
- 9SRA (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi HibA:ribosome with an SD:antiSD duplex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.2 Å
Loop
- Sequence
- GUCUCAUUUCGAACC
- Length
- 15 nucleotides
- Bulged bases
- 9SRA|1|3|U|41
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRA_103 not in the Motif Atlas
- Geometric match to HL_9E6Q_068
- Geometric discrepancy: 0.1227
- The information below is about HL_9E6Q_068
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.4
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9SRA|1|3|G|34
9SRA|1|3|U|35
9SRA|1|3|C|36
9SRA|1|3|U|37
9SRA|1|3|C|38
9SRA|1|3|A|39
9SRA|1|3|U|40
9SRA|1|3|U|41
9SRA|1|3|U|42
9SRA|1|3|C|43
9SRA|1|3|G|44
9SRA|1|3|A|45
9SRA|1|3|A|46
9SRA|1|3|C|47
9SRA|1|3|C|48
Current chains
- Chain 3
- rRNA 5S
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BO
- Large ribosomal subunit protein uL18
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