HL_9SRB_020
3D structure
- PDB id
- 9SRB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA and SBDS
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.3 Å
Loop
- Sequence
- UCUUGAAACA
- Length
- 10 nucleotides
- Bulged bases
- 9SRB|1|1|C|780
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SRB_020 not in the Motif Atlas
- Homologous match to HL_4V9F_018
- Geometric discrepancy: 0.1948
- The information below is about HL_4V9F_018
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.6
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 139
Unit IDs
9SRB|1|1|U|772
9SRB|1|1|C|773
9SRB|1|1|U|774
9SRB|1|1|U|775
9SRB|1|1|G|776
9SRB|1|1|A|777
9SRB|1|1|A|778
9SRB|1|1|A|779
9SRB|1|1|C|780
9SRB|1|1|A|781
Current chains
- Chain 1
- rRNA 23S
Nearby chains
- Chain BC
- Large ribosomal subunit protein uL3
- Chain BL
- Large ribosomal subunit protein uL15
- Chain Bb
- Large ribosomal subunit protein eL32
Coloring options: