HL_9SRC_032

3D structure

PDB id

9SRC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA in PTC conformation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9SRC|1|1|A|1325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRC_032 not in the Motif Atlas

Homologous match to HL_5D8H_001

Geometric discrepancy: 0.2861

The information below is about HL_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9SRC|1|1|C|1319
9SRC|1|1|U|1320
9SRC|1|1|U|1321
9SRC|1|1|A|1322
9SRC|1|1|G|1323
9SRC|1|1|A|1324
9SRC|1|1|A|1325
9SRC|1|1|G|1326
9SRC|1|1|C|1327
9SRC|1|1|A|1328
9SRC|1|1|G|1329

Current chains

Chain 1

rRNA 23S

Nearby chains