HL_9SRD_020

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

UCUUGAAACA

Length

10 nucleotides

Bulged bases

9SRD|1|1|C|780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_020 not in the Motif Atlas

Homologous match to HL_4V9F_018

Geometric discrepancy: 0.1979

The information below is about HL_4V9F_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9SRD|1|1|U|772
9SRD|1|1|C|773
9SRD|1|1|U|774
9SRD|1|1|U|775
9SRD|1|1|G|776
9SRD|1|1|A|777
9SRD|1|1|A|778
9SRD|1|1|A|779
9SRD|1|1|C|780
9SRD|1|1|A|781

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BC

Large ribosomal subunit protein uL3

Chain BL

Large ribosomal subunit protein uL15

Chain Bb

Large ribosomal subunit protein eL32