HL_9SRD_032

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

9SRD|1|1|A|1325

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_032 not in the Motif Atlas

Homologous match to HL_5D8H_001

Geometric discrepancy: 0.3026

The information below is about HL_5D8H_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

9SRD|1|1|C|1319
9SRD|1|1|U|1320
9SRD|1|1|U|1321
9SRD|1|1|A|1322
9SRD|1|1|G|1323
9SRD|1|1|A|1324
9SRD|1|1|A|1325
9SRD|1|1|G|1326
9SRD|1|1|C|1327
9SRD|1|1|A|1328
9SRD|1|1|G|1329

Current chains

Chain 1

rRNA 23S

Nearby chains