HL_9SRD_036

3D structure

PDB id

9SRD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. abyssi 70S ribosome in complex with hibernation factor HibA (HibA-uL5 conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.1 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SRD_036 not in the Motif Atlas

Homologous match to HL_4V9F_034

Geometric discrepancy: 0.1735

The information below is about HL_4V9F_034

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.6

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

139

Unit IDs

9SRD|1|1|G|1540
9SRD|1|1|U|1541
9SRD|1|1|G|1542
9SRD|1|1|A|1543
9SRD|1|1|G|1544
9SRD|1|1|A|1545
9SRD|1|1|A|1546
9SRD|1|1|U|1547
9SRD|1|1|C|1548

Current chains

Chain 1

rRNA 23S

Nearby chains

Chain BQ

Large ribosomal subunit protein eL19

Chain BS

Large ribosomal subunit protein uL22

Chain Ba

Large ribosomal subunit protein eL31