HL_9SS0_027

3D structure

PDB id

9SS0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S ribosomal subunit RimM-KO with IF1 and IF3 (State I)

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

9SS0|1|D1|C|1320, 9SS0|1|D1|U|1321, 9SS0|1|D1|C|1322

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS0_027 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.5088

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SS0|1|D1|C|1314
9SS0|1|D1|U|1315
9SS0|1|D1|G|1316
9SS0|1|D1|C|1317
9SS0|1|D1|A|1318
9SS0|1|D1|A|1319
9SS0|1|D1|C|1320
9SS0|1|D1|U|1321
9SS0|1|D1|C|1322
9SS0|1|D1|G|1323

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains