HL_9SS4_005
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UGAAUCCAUAG
- Length
- 11 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS4_005 not in the Motif Atlas
- Homologous match to HL_8B0X_037
- Geometric discrepancy: 0.1672
- The information below is about HL_8B0X_037
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50765.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
9SS4|1|D2|U|158
9SS4|1|D2|G|159
9SS4|1|D2|A|160
9SS4|1|D2|A|161
9SS4|1|D2|U|162
9SS4|1|D2|C|163
9SS4|1|D2|C|164
9SS4|1|D2|A|165
9SS4|1|D2|U|166
9SS4|1|D2|A|167
9SS4|1|D2|G|168
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B1
- Large ribosomal subunit protein bL28
Coloring options: