HL_9SS4_009

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

9SS4|1|D2|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.1346

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

9SS4|1|D2|C|305
9SS4|1|D2|U|306
9SS4|1|D2|G|307
9SS4|1|D2|G|308
9SS4|1|D2|A|309
9SS4|1|D2|A|310
9SS4|1|D2|A|311
9SS4|1|D2|G|312

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BX

Large ribosomal subunit protein uL24