HL_9SS4_010

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

9SS4|1|D2|G|329, 9SS4|1|D2|A|330, 9SS4|1|D2|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_010 not in the Motif Atlas

Homologous match to HL_7A0S_012

Geometric discrepancy: 0.361

The information below is about HL_7A0S_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.5

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

17

Unit IDs

9SS4|1|D2|G|327
9SS4|1|D2|U|328
9SS4|1|D2|G|329
9SS4|1|D2|A|330
9SS4|1|D2|C|331
9SS4|1|D2|A|332
9SS4|1|D2|G|333
9SS4|1|D2|C|334
9SS4|1|D2|C|335

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BD

Large ribosomal subunit protein uL4

Chain BX

Large ribosomal subunit protein uL24