HL_9SS4_015

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UUAG

Length

4 nucleotides

Bulged bases

9SS4|1|D2|A|547

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_015 not in the Motif Atlas

Homologous match to HL_7A0S_017

Geometric discrepancy: 0.5889

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.4

Basepair signature

cWW-F

Number of instances in this motif group

48

Unit IDs

9SS4|1|D2|U|545
9SS4|1|D2|U|546
9SS4|1|D2|A|547
9SS4|1|D2|G|548

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BU

Large ribosomal subunit protein bL21