HL_9SS4_032

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

9SS4|1|D2|U|1325, 9SS4|1|D2|U|1329

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_032 not in the Motif Atlas

Homologous match to HL_7A0S_033

Geometric discrepancy: 0.2327

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

9SS4|1|D2|G|1324
9SS4|1|D2|U|1325
9SS4|1|D2|U|1326
9SS4|1|D2|A|1327
9SS4|1|D2|A|1328
9SS4|1|D2|U|1329
9SS4|1|D2|C|1330

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BQ

Large ribosomal subunit protein bL17

Chain BV

Large ribosomal subunit protein uL22