HL_9SS4_039

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

9SS4|1|D2|A|1614, 9SS4|1|D2|A|1616, 9SS4|1|D2|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_039 not in the Motif Atlas

Homologous match to HL_7A0S_040

Geometric discrepancy: 0.1072

The information below is about HL_7A0S_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

9SS4|1|D2|C|1612
9SS4|1|D2|G|1613
9SS4|1|D2|A|1614
9SS4|1|D2|C|1615
9SS4|1|D2|A|1616
9SS4|1|D2|C|1617
9SS4|1|D2|A|1618
9SS4|1|D2|G|1619

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B7

Large ribosomal subunit protein bL34

Chain BV

Large ribosomal subunit protein uL22