HL_9SS4_044
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- UUUAUUAAAAA
- Length
- 11 nucleotides
- Bulged bases
- 9SS4|1|D2|A|1780, 9SS4|1|D2|U|1781, 9SS4|1|D2|U|1782, 9SS4|1|D2|A|1786
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS4_044 not in the Motif Atlas
- Geometric match to HL_4WF9_043
- Geometric discrepancy: 0.0853
- The information below is about HL_4WF9_043
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_87681.2
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 10
Unit IDs
9SS4|1|D2|U|1777
9SS4|1|D2|U|1778
9SS4|1|D2|U|1779
9SS4|1|D2|A|1780
9SS4|1|D2|U|1781
9SS4|1|D2|U|1782
9SS4|1|D2|A|1783
9SS4|1|D2|A|1784
9SS4|1|D2|A|1785
9SS4|1|D2|A|1786
9SS4|1|D2|A|1787
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B7
- Large ribosomal subunit protein bL34
- Chain BB
- Large ribosomal subunit protein uL2
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