HL_9SS4_046

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

9SS4|1|D2|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_046 not in the Motif Atlas

Homologous match to HL_7A0S_048

Geometric discrepancy: 0.186

The information below is about HL_7A0S_048

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33350.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9SS4|1|D2|G|1949
9SS4|1|D2|G|1950
9SS4|1|D2|U|1951
9SS4|1|D2|A|1952
9SS4|1|D2|A|1953
9SS4|1|D2|G|1954
9SS4|1|D2|U|1955
9SS4|1|D2|U|1956
9SS4|1|D2|C|1957

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BN

Large ribosomal subunit protein uL14