HL_9SS4_047
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 9SS4|1|D2|A|2030, 9SS4|1|D2|A|2031, 9SS4|1|D2|G|2032
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS4_047 not in the Motif Atlas
- Homologous match to HL_7A0S_049
- Geometric discrepancy: 0.2168
- The information below is about HL_7A0S_049
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.2
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
9SS4|1|D2|G|2027
9SS4|1|D2|U|2028
9SS4|1|D2|G|2029
9SS4|1|D2|A|2030
9SS4|1|D2|A|2031
9SS4|1|D2|G|2032
9SS4|1|D2|A|2033
9SS4|1|D2|U|2034
9SS4|1|D2|G|2035
9SS4|1|D2|C|2036
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B5
- Large ribosomal subunit protein bL32
- Chain BC
- 50S ribosomal protein L3
- Chain BU
- Large ribosomal subunit protein bL21
Coloring options: