HL_9SS4_050

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

9SS4|1|D2|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_050 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1634

The information below is about HL_7A0S_052

Detailed Annotation

LSU P loop

Broad Annotation

LSU P loop

Motif group

HL_11974.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

19

Unit IDs

9SS4|1|D2|C|2248
9SS4|1|D2|U|2249
9SS4|1|D2|G|2250
9SS4|1|D2|G|2251
9SS4|1|D2|G|2252
9SS4|1|D2|G|2253
9SS4|1|D2|C|2254
9SS4|1|D2|G|2255
9SS4|1|D2|G|2256

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B0

Large ribosomal subunit protein bL27

Chain BP

50S ribosomal protein L16