HL_9SS4_051
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- CUAAAGAGUAACG
- Length
- 13 nucleotides
- Bulged bases
- 9SS4|1|D2|A|2268, 9SS4|1|D2|C|2275
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS4_051 not in the Motif Atlas
- Homologous match to HL_7A0S_053
- Geometric discrepancy: 0.108
- The information below is about HL_7A0S_053
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.2
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
9SS4|1|D2|C|2264
9SS4|1|D2|U|2265
9SS4|1|D2|A|2266
9SS4|1|D2|A|2267
9SS4|1|D2|A|2268
9SS4|1|D2|G|2269
9SS4|1|D2|A|2270
9SS4|1|D2|G|2271
9SS4|1|D2|U|2272
9SS4|1|D2|A|2273
9SS4|1|D2|A|2274
9SS4|1|D2|C|2275
9SS4|1|D2|G|2276
Current chains
- Chain D2
- 23S Ribosomal RNA
Nearby chains
- Chain B0
- Large ribosomal subunit protein bL27
- Chain BP
- 50S ribosomal protein L16
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