HL_9SS4_052

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUCGGACAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_052 not in the Motif Atlas

Geometric match to HL_8GLP_061

Geometric discrepancy: 0.2803

The information below is about HL_8GLP_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02452.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

9

Unit IDs

9SS4|1|D2|G|2304
9SS4|1|D2|U|2305
9SS4|1|D2|C|2306
9SS4|1|D2|G|2307
9SS4|1|D2|G|2308
9SS4|1|D2|A|2309
9SS4|1|D2|C|2310
9SS4|1|D2|A|2311
9SS4|1|D2|U|2312

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BE

Large ribosomal subunit protein uL5