HL_9SS4_056

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

9SS4|1|D2|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_056 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.1413

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

9SS4|1|D2|U|2404
9SS4|1|D2|G|2405
9SS4|1|D2|A|2406
9SS4|1|D2|A|2407
9SS4|1|D2|U|2408
9SS4|1|D2|G|2409
9SS4|1|D2|G|2410
9SS4|1|D2|A|2411
9SS4|1|D2|A|2412
9SS4|1|D2|G|2413

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain BO

Large ribosomal subunit protein uL15