HL_9SS4_058

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

9SS4|1|D2|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_058 not in the Motif Atlas

Homologous match to HL_7A0S_060

Geometric discrepancy: 0.1512

The information below is about HL_7A0S_060

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_46665.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

9SS4|1|D2|U|2528
9SS4|1|D2|G|2529
9SS4|1|D2|A|2530
9SS4|1|D2|A|2531
9SS4|1|D2|G|2532
9SS4|1|D2|U|2533
9SS4|1|D2|A|2534
9SS4|1|D2|G|2535

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains

Chain B9

Large ribosomal subunit protein bL36A

Chain BF

Large ribosomal subunit protein uL6