HL_9SS4_064

3D structure

PDB id

9SS4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

9SS4|1|D2|U|2797, 9SS4|1|D2|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS4_064 not in the Motif Atlas

Geometric match to HL_6VMY_004

Geometric discrepancy: 0.3347

The information below is about HL_6VMY_004

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_61337.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

72

Unit IDs

9SS4|1|D2|C|2795
9SS4|1|D2|U|2796
9SS4|1|D2|U|2797
9SS4|1|D2|U|2798
9SS4|1|D2|A|2799
9SS4|1|D2|A|2800
9SS4|1|D2|G|2801

Current chains

Chain D2

23S Ribosomal RNA

Nearby chains