HL_9SS4_067
3D structure
- PDB id
- 9SS4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- pre-50S ribosomal subunit in rimM-KO with RsfS (-H68)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 9SS4|1|D3|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_9SS4_067 not in the Motif Atlas
- Geometric match to HL_8B0X_102
- Geometric discrepancy: 0.1799
- The information below is about HL_8B0X_102
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.4
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
9SS4|1|D3|A|34
9SS4|1|D3|C|35
9SS4|1|D3|C|36
9SS4|1|D3|C|37
9SS4|1|D3|C|38
9SS4|1|D3|A|39
9SS4|1|D3|U|40
9SS4|1|D3|G|41
9SS4|1|D3|C|42
9SS4|1|D3|C|43
9SS4|1|D3|G|44
9SS4|1|D3|A|45
9SS4|1|D3|A|46
9SS4|1|D3|C|47
9SS4|1|D3|U|48
Current chains
- Chain D3
- 5S Ribosomal RNA
Nearby chains
- Chain B4
- Large ribosomal subunit protein bL31A
- Chain BE
- Large ribosomal subunit protein uL5
- Chain BR
- Large ribosomal subunit protein uL18
- Chain D2
- Large subunit ribosomal RNA; LSU rRNA
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