HL_9SS6_029

3D structure

PDB id

9SS6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome from RimM-KO

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_9SS6_029 not in the Motif Atlas

Homologous match to HL_6CZR_100

Geometric discrepancy: 0.2229

The information below is about HL_6CZR_100

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_02887.2

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

9SS6|1|D1|C|1314
9SS6|1|D1|U|1315
9SS6|1|D1|G|1316
9SS6|1|D1|C|1317
9SS6|1|D1|A|1318
9SS6|1|D1|A|1319
9SS6|1|D1|C|1320
9SS6|1|D1|U|1321
9SS6|1|D1|C|1322
9SS6|1|D1|G|1323

Current chains

Chain D1

16S Ribosomal RNA

Nearby chains

Chain AL

Small ribosomal subunit protein uS13

Chain AM

Small ribosomal subunit protein uS14

Chain AR

Small ribosomal subunit protein uS19