HL_9SUM_044

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

9SUM|1|A|A|2171

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82185.4

Basepair signature

cWW-F-F-tHW-F-F-F-F

Number of instances in this motif group

7

Unit IDs

9SUM|1|A|G|2168
9SUM|1|A|U|2169
9SUM|1|A|A|2170
9SUM|1|A|A|2171
9SUM|1|A|C|2172
9SUM|1|A|U|2173
9SUM|1|A|A|2174
9SUM|1|A|U|2175
9SUM|1|A|G|2176
9SUM|1|A|A|2177
9SUM|1|A|C|2178

Current chains

Chain A

25S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA