HL_9SUM_046

3D structure

PDB id

9SUM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of Candida auris 80S ribosome in complex with Cycloheximide and Geneticin G418

Experimental method

ELECTRON MICROSCOPY

Resolution

1.99 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

9SUM|1|A|A|2287, 9SUM|1|A|A|2288, 9SUM|1|A|C|2289

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

12

Unit IDs

9SUM|1|A|G|2284
9SUM|1|A|G|2285
9SUM|1|A|G|2286
9SUM|1|A|A|2287
9SUM|1|A|A|2288
9SUM|1|A|C|2289
9SUM|1|A|G|2290
9SUM|1|A|G|2291
9SUM|1|A|G|2292
9SUM|1|A|C|2293

Current chains

Chain A

25S rRNA

Nearby chains

Chain E

Large ribosomal subunit protein uL3

Chain Q

60S ribosomal protein L16-B

Chain g

60S ribosomal protein L32